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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_571726_572316_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
571726 - 572316
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGGTGA
5'SS Class:
weak_major
3'SS Sequence:
GTTCCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTGCTACTAACT
Flanking Amino Acid:
GIRSTSLHKRASGNKDPRGQ
Intron Amino Acid Position:
1692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.17
1.3
49.6
43.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
78.9
0.65
0.9
72.7
37.5
Minor 5ss
30.6
-2.2
3.3
30
43.3
Minor BPS
47.5
-0.1
1.9
66.95
43.5

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982