About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5722032_5723303_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5722032 - 5723303
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTGTAACT
Flanking Amino Acid:
WNFADFMTNQGTTRVLGNKK
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.6
0.6
0.9
69.4
36
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943