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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5724533_5726059_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5724533 - 5726059
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CCTATCTTATTT
Flanking Amino Acid:
TDTNYAVDRGAPYVDVICVN
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.2
34
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
85.3
0.8
0.7
81.7
30
Minor 5ss
41.5
-0.9
2.8
49.9
46.4
Minor BPS
53.8
0.2
1.7
67.45
44.1

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943