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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5726145_5727297_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5726145 - 5727297
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
CTTTCCTTTATT
Flanking Amino Acid:
AELPPAAYYFKTLVAHTKAL
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
67.7
0.4
1.1
63.2
42.1
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
74.7
0.86
1.6
87.87
37.8

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943