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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5727445_5727840_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5727445 - 5727840
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCCTCACCT
Flanking Amino Acid:
DECPGVGIKMPESFGNKSLQ
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
66.3
39.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.5
0.84
0.7
84.9
29.9
Minor 5ss
34.8
-1.7
3.2
46.2
42.2
Minor BPS
60.1
0.39
1.9
78.32
43.4

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943