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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5730061_5730576_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5730061 - 5730576
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTCA
5'SS Class:
major
3'SS Sequence:
TTCTCTGAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GTTCTCTGAACT
Flanking Amino Acid:
TVTTTSTESVAKVQYQVSVV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.3
36.4
Major BPS
79
0.72
1
69
38.9
Major PPT
64.6
0.33
1
59.5
40.8
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
69
0.67
1.4
83.31
36.9

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943