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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5731388_5731852_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5731388 - 5731852
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCATGGCTATCT
Flanking Amino Acid:
FGSAHYYSVVWVNGVQVVEH
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
66
40.7
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
39.6
-1.2
3
49.8
41.8
Minor BPS
38.8
-0.7
2.6
61.02
48.3

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943