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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5732036_5733570_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5732036 - 5733570
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCGG
5'SS Class:
major
3'SS Sequence:
CAATTCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTGTACAA
Flanking Amino Acid:
QRWYRRPLRETGPVIDMPVP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
48.7
47.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
66
0.36
1
58.5
42.5
Minor 5ss
28.4
-2.5
3.5
38.7
46.4
Minor BPS
49.2
-0
2.3
71.99
40.5

Associated Gene:

Gene:
GUSB
Ensembl Gene ID:
ENSAPLG00000012409
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012949
5721865 - 5733807
11943