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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5755579_5758896_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5755579 - 5758896
Intron Length:
3318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ACGTAAATAATT
Flanking Amino Acid:
MEVKDANAALLS
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
66
39.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.9
0.74
0.8
81.2
36.5
Minor 5ss
34.5
-1.8
3.2
43.8
43.8
Minor BPS
45.2
-0.2
2
61.55
42.2

Associated Gene:

Gene:
CRCP
Ensembl Gene ID:
ENSAPLG00000018879
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046363
5755571 - 5790760
35190