About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5758934_5761278_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5758934 - 5761278
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATAATCTCAAAT
Flanking Amino Acid:
ANAALLSNFEVFQLLTDLKQ
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
52.4
0.15
1.7
69.87
40.2

Associated Gene:

Gene:
CRCP
Ensembl Gene ID:
ENSAPLG00000018879
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046363
5755571 - 5790760
35190