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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5761378_5764792_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5761378 - 5764792
Intron Length:
3415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTCCTATTC
Flanking Amino Acid:
QQNLNTIMYETLKYISKTPC
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.3
0.55
0.8
73.1
31.5
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
57
0.2
1.9
74.44
36.6

Associated Gene:

Gene:
CRCP
Ensembl Gene ID:
ENSAPLG00000018879
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046363
5755571 - 5790760
35190