About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5764888_5776651_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5764888 - 5776651
Intron Length:
11764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGTTTCTAAACA
Flanking Amino Acid:
LIAMKGHKLTKAEKLQLLNH
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
74.2
0.54
1
70.6
39.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
70.4
0.64
1.6
79.59
36.6

Associated Gene:

Gene:
CRCP
Ensembl Gene ID:
ENSAPLG00000018879
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046363
5755571 - 5790760
35190