Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_57687_57832_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57687 - 57832

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

CTTTTCTTCACA

Flanking Amino Acid:

EKKERRRRQGKEVRADTKYT

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

86.9

22.7

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

87.9

0.85

0.7

83.3

25.1

Minor 5ss

45.5

-0.5

2.8

58.5

40.4

Minor BPS

68.5

0.58

1.7

78.35

38.8

Associated Gene:

Gene:

BUD23

Ensembl Gene ID:

ENSAPLG00000030203

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024634

53984 - 57918

3935