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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5776710_5784961_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5776710 - 5784961
Intron Length:
8252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
RPVTAVEIQLMVEESEERLT
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.7
0.85
0.7
82.5
28.1
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
CRCP
Ensembl Gene ID:
ENSAPLG00000018879
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046363
5755571 - 5790760
35190