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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5811634_5818226_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5811634 - 5818226
Intron Length:
6593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TCTCCCTCCACA
Flanking Amino Acid:
IGKAGGVSLSKVERSTDQVI
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
69.1
0.48
1
70
32.1
Major PPT
78
0.63
0.7
72.1
26.1
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
53.8
0.11
2
69.11
43.1

Associated Gene:

Gene:
TPST1
Ensembl Gene ID:
ENSAPLG00000006925
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047557
5810690 - 5830850
20161
ENSAPLT00000007189
5810690 - 5830850
20161