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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_582471_583845_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
582471 - 583845
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
GCAGTGATAACA
Flanking Amino Acid:
GDMDEDGFFEGELMDGRRGL
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
81.2
0.7
0.9
81.2
36.5
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
41.3
-0.6
2.2
49.03
41.7

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982