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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5828195_5829732_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5828195 - 5829732
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGCTTATTAAAA
Flanking Amino Acid:
LPDFLKEVPQPKKTVERKSR
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.5
0.84
0.8
80.2
37.3
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
51.7
0.05
1.7
60.82
38.6

Associated Gene:

Gene:
TPST1
Ensembl Gene ID:
ENSAPLG00000006925
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047557
5810690 - 5830850
20161