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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5837467_5838215_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5837467 - 5838215
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATGATG
Flanking Amino Acid:
GEALPLLPQQFPEVVPLNVG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.5
0.82
0.8
84.1
30.8
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
43.3
-0.6
2.2
56.19
39.6

Associated Gene:

Gene:
KCTD7
Ensembl Gene ID:
ENSAPLG00000016810
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034071
5836627 - 5841651
5025