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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5838386_5840571_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5838386 - 5840571
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AACTTCTTAATT
Flanking Amino Acid:
YFIDRDGAYFGDILNFLRSG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.9
0.63
0.8
76.4
32.3
Minor 5ss
41.9
-0.9
3.1
49
47.2
Minor BPS
73.8
0.82
1.1
78.94
37.5

Associated Gene:

Gene:
KCTD7
Ensembl Gene ID:
ENSAPLG00000016810
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034071
5836627 - 5841651
5025