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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5840751_5841274_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5840751 - 5841274
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTACAATT
Flanking Amino Acid:
AFLGLMPYYKDHLERIIEIA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.8
77.4
36.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
49.9
0.07
1.8
72.27
39.4

Associated Gene:

Gene:
KCTD7
Ensembl Gene ID:
ENSAPLG00000016810
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034071
5836627 - 5841651
5025