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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5861259_5865303_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5861259 - 5865303
Intron Length:
4045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTTTT
5'SS Class:
major
3'SS Sequence:
CAAACTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTGTCCAAACT
Flanking Amino Acid:
TASSRAGAKKAEIQESKSPS
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
78.8
38.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
67.1
0.39
1
57.6
42.5
Minor 5ss
54.4
0.15
2.5
67.5
43.6
Minor BPS
48.7
-0
2.1
72.75
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007107
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007382
5858590 - 5870501
11912