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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_588265_588637_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
588265 - 588637
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGTTATTTTATT
Flanking Amino Acid:
SSSPQLHWEKDSTGPALLTH
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.8
82
33.9
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
51.3
0.12
1.8
70.32
40.4

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982