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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_588822_594594_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
588822 - 594594
Intron Length:
5773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGCCTCATCT
Flanking Amino Acid:
EHEGAVQLLEARVKDLEEQC
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.9
81.1
31
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
55.7
0.26
2
77.14
45

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982