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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5935893_5938601_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5935893 - 5938601
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGATAAAT
5'SS Class:
major
3'SS Sequence:
GCTAATCTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
CTAATCTAAAAG
Flanking Amino Acid:
SSLSASACGCGFVLATGFSS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1
69.6
36.4
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
53.7
0.08
1.2
53
40.4
Minor 5ss
29.3
-2.4
2.9
32.3
42
Minor BPS
46.3
-0.4
1.8
49.62
44

Associated Gene:

Gene:
LRRC75A
Ensembl Gene ID:
ENSAPLG00000007361
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024933
5935753 - 5977024
41272