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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_595094_595478_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
595094 - 595478
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGG
5'SS Class:
major
3'SS Sequence:
AATTGTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTGCCTTTAAAC
Flanking Amino Acid:
KLENLEQVLKHMRDVAERRQ
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.3
72.7
44.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
77.3
0.61
0.9
70.4
40.3
Minor 5ss
30.5
-2.2
2.5
34.4
41.1
Minor BPS
67.8
0.54
1.4
73.1
37.6

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982