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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_595602_596222_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
595602 - 596222
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TATGTGCTAATT
Flanking Amino Acid:
LNEKAGWAGQVESENADLKL
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86.7
0.82
0.7
84.5
23.4
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
45.7
-0.2
2.3
68.95
42.5

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982