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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5956488_5976420_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5956488 - 5976420
Intron Length:
19933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
CCCACATTTACA
Flanking Amino Acid:
QGIMKRKPQSCLKAVLMGKP
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
61.4
44.7
Major BPS
72.8
0.57
1
81
30.3
Major PPT
75.9
0.58
0.7
69.2
24.6
Minor 5ss
28.3
-2.5
2.7
29.1
37
Minor BPS
46.2
-0.3
2
52.98
44.8

Associated Gene:

Gene:
LRRC75A
Ensembl Gene ID:
ENSAPLG00000007361
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024933
5935753 - 5977024
41272
ENSAPLT00000037219
5913117 - 5977350
64234
ENSAPLT00000029645
5913117 - 5977024
63908