Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_596313_597551_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

596313 - 597551

Intron Length:

1239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TGTTTCTGGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGAAT

U12 Branch Point Sequence:

TGTTTCTGGACA

Flanking Amino Acid:

RKKHKRCKELEIQLQEIQSE

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.3

77.9

36.8

Major BPS

59.5

0.24

1.5

69.7

44.2

Major PPT

71.5

0.48

1.1

68.6

42.1

Minor 5ss

40.1

-1.1

3.4

58.8

40.3

Minor BPS

66.4

0.51

1.4

75.68

Associated Gene:

Gene:

TSPOAP1

Ensembl Gene ID:

ENSAPLG00000011861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012389

557151 - 624132

66982