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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_597636_598545_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
597636 - 598545
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATCTATTTATTC
Flanking Amino Acid:
PESSQQIQQLEFELKKKRKK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.9
80.6
37
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
49.9
-0
1.7
61.1
38.9

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982