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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5976870_5977297_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5976870 - 5977297
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCCGGGCCG
5'SS Class:
major
3'SS Sequence:
ATGCATCATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
GQVSDLESQDGGVRARPVEE
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.3
50.5
40.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
54
0.09
1.2
50.3
42.5
Minor 5ss
15.2
-4
3.6
22.6
36.9
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
LRRC75A
Ensembl Gene ID:
ENSAPLG00000007361
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037219
5913117 - 5977350
64234