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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_598654_603792_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
598654 - 603792
Intron Length:
5139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GATATCTTACTT
Flanking Amino Acid:
PVLRVEAHRKVEPGVLPLGI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
79
0.72
1
69
38.9
Major PPT
79.2
0.66
0.9
69.5
41.1
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
55.7
0.26
1.6
70.23
40.8

Associated Gene:

Gene:
TSPOAP1
Ensembl Gene ID:
ENSAPLG00000011861
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012389
557151 - 624132
66982