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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6002966_6003347_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6002966 - 6003347
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
CTTACAAGAATC
Flanking Amino Acid:
LTPPYKHRHSGLVNVPEEPI
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
82.4
0.73
0.9
76.6
37.7
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
44.7
-0.4
1.9
58.51
40

Associated Gene:

Gene:
NCBP3
Ensembl Gene ID:
ENSAPLG00000007373
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007666
5999654 - 6014644
14991