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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6003896_6004667_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6003896 - 6004667
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
ATCCCAATAATT
Flanking Amino Acid:
NKLFMRFATKDDKKELGAAR
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
49.6
0.05
1.9
70.34
40.3

Associated Gene:

Gene:
NCBP3
Ensembl Gene ID:
ENSAPLG00000007373
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007666
5999654 - 6014644
14991