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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6004777_6005702_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6004777 - 6005702
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTGAGT
Flanking Amino Acid:
VEDEHPSDVELDALSQVEED
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.7
0.33
1
64.2
31.6
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
62
0.46
1.6
78.71
38

Associated Gene:

Gene:
NCBP3
Ensembl Gene ID:
ENSAPLG00000007373
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007666
5999654 - 6014644
14991