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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6012924_6014503_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6012924 - 6014503
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTCATTGAGA
Flanking Amino Acid:
VRRSLRELLPDTSRRYENKA
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
36.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
24.6
-2.9
3.4
32.4
42.7
Minor BPS
57.8
0.24
1.9
72.63
39

Associated Gene:

Gene:
NCBP3
Ensembl Gene ID:
ENSAPLG00000007373
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007666
5999654 - 6014644
14991