About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6019302_6026521_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6019302 - 6026521
Intron Length:
7220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTTTGTTGATA
Flanking Amino Acid:
RAGGEGPGAPGLNPTRFRIG
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
54.4
0.13
2.1
68.91
38.3

Associated Gene:

Gene:
CRK
Ensembl Gene ID:
ENSAPLG00000007541
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007818
6019058 - 6032742
13685