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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6027061_6032604_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6027061 - 6032604
Intron Length:
5544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TCTCATCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCATCC
Flanking Amino Acid:
AYDKTALALEVGELVKVTKI
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.8
0.67
0.8
73.5
31.1
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
58.2
0.24
1.8
71.62
39.4

Associated Gene:

Gene:
CRK
Ensembl Gene ID:
ENSAPLG00000007541
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007818
6019058 - 6032742
13685