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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6049233_6053734_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6049233 - 6053734
Intron Length:
4502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
LKMIREYRQMVETELKLICC
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
YWHAE
Ensembl Gene ID:
ENSAPLG00000007551
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007843
6038738 - 6059376
20639