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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6055308_6059323_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6055308 - 6059323
Intron Length:
4016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AACACTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTCCCTACTT
Flanking Amino Acid:
TLWTSDMQGDGEEQNKEALQ
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.1
0.25
0.9
54.1
35.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
59.3
0.37
2
80.27
42.1

Associated Gene:

Gene:
YWHAE
Ensembl Gene ID:
ENSAPLG00000007551
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007843
6038738 - 6059376
20639