About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6062526_6063613_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6062526 - 6063613
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGGTTCCTAGCT
Flanking Amino Acid:
AKAKNGHLTVVAPRLNSR*
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
86.3
0.82
0.7
81.2
23.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
51.9
0.14
1.9
73.2
43.5

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196