Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6064558_6065502_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6064558 - 6065502

Intron Length:

945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAA

U12 Branch Point Sequence:

TTGGTGTCAAAC

Flanking Amino Acid:

KQRIDYANLTGISVSSLSDN

Intron Amino Acid Position:

967

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.8

77.6

33.4

Major BPS

57.9

0.2

1.4

63.4

44.3

Major PPT

84.9

0.78

0.8

80.1

31.9

Minor 5ss

36.1

-1.6

3.2

46.6

48.7

Minor BPS

42.4

-0.5

2.3

54.94

43.4

Associated Gene:

Gene:

MYO1C

Ensembl Gene ID:

ENSAPLG00000007694

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043899

6061088 - 6117297

56210

ENSAPLT00000027147

6061088 - 6092694

31607

ENSAPLT00000008084

6062499 - 6092694

30196