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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6066235_6066339_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6066235 - 6066339
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
VPRLFINTRLGNEEINTKVL
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.9
0.45
1
67.8
42.7
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196