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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6066434_6067688_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6066434 - 6067688
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAAC
5'SS Class:
major
3'SS Sequence:
TTTGTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTCTGCTTAACA
Flanking Amino Acid:
KRISPEWKQQLEQKVIASEI
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
63.4
43.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
44.1
-0.6
2.9
60.3
44.4
Minor BPS
74.7
0.77
1.7
83.03
38.2

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008084
6062499 - 6092694
30196
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607