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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6069782_6069939_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6069782 - 6069939
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTCTCTTATCA
Flanking Amino Acid:
DALEVRKQSLATKMQATWRG
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
81.3
0.7
0.9
78
34.9
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
69.6
0.61
1.6
80.51
35.1

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196