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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6070017_6070197_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6070017 - 6070197
Intron Length:
181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAATT
Flanking Amino Acid:
GYKQEEYKMGRTKIFIRFPK
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
72.7
39.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.8
0.78
0.7
78
35.4
Minor 5ss
38.7
-1.3
2.8
52.5
43.9
Minor BPS
72.5
0.79
1.3
85.49
34.4

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196