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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6070312_6070516_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6070312 - 6070516
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
CTCTCCCTAAGA
Flanking Amino Acid:
YRRKYEVFLQRYKSLCPETW
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
69.5
0.44
0.9
61.8
38.7
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
54.6
0.14
2
67.55
44.9

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008084
6062499 - 6092694
30196
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607