About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6071539_6071804_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6071539 - 6071804
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTACTTTATCT
Flanking Amino Acid:
NDLLFRNLKETMCNSENPII
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
84.2
0.77
0.7
79.2
26.3
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
65.7
0.57
1.6
81.52
39.9

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196
ENSAPLT00000043899
6061088 - 6117297
56210