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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6071852_6072085_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6071852 - 6072085
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GCAGCCTGAGTG
Flanking Amino Acid:
YAGEVTYSVAGFLDKNNDLL
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
43.7
-0.6
1.8
41.74
43

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196
ENSAPLT00000043899
6061088 - 6117297
56210