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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6073480_6073880_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6073480 - 6073880
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
AAATCAATACTA
Flanking Amino Acid:
EKFKGIISILDEECLRPGDA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
62.4
0.31
1
64
32.1
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
43.8
-0.4
2
54.41
37.5

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196