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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_6073962_6074348_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6073962 - 6074348
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TGTCACCCAAAT
Flanking Amino Acid:
QEEYESEGIAWEPVQYFNNK
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
86
0.81
0.8
80.4
31.5
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
44.3
-0.3
2.1
66.66
42.6

Associated Gene:

Gene:
MYO1C
Ensembl Gene ID:
ENSAPLG00000007694
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043899
6061088 - 6117297
56210
ENSAPLT00000027147
6061088 - 6092694
31607
ENSAPLT00000008084
6062499 - 6092694
30196